« Previous
Next »
Reproductive BioMedicine Online
Volume 21, Issue 4
, Pages 537-551
, October 2010
A universal carrier test for the long tail of Mendelian disease
References
- . Recurrent non-immune hydrops fetalis with gracile bones and dysmorphic features in siblings. Am. J. Med. Genet. 2008;146A:1503–1508
- . Molecular inversion probe assay. Methods Mol. Biol. 2007;396:315–330
- . Carrier screening for spinal muscular atrophy. Genet. Med. 2008;10:917–918
- Anderson, C., 2006. The Long Tail: Why the Future of Business is Selling Less of More. Hyperion, 77 West 66th Street, New York, New York 10023.
- Applied Biosystems, 2007. Targeted Resequencing and Rare Allele Detection.
- . Survival in familial dysautonomia: impact of early intervention. J. Pediatr. 2002;141:518–523
- . Tay–Sachs screening in the Jewish Ashkenazi population: DNA testing is the preferred procedure. Am. J. Med. Genet. 2001;99:70–75
- . Prevention of lysosomal storage disorders in Israel. Mol. Genet. Metab. 2007;90:353–357
- . Cost of care and clinical condition in paediatric cystic fibrosis patients. J. Cyst. Fibros. 2003;2:84–90
- . The impact of population based screening for carriers of cystic fibrosis. J. Med. Genet. 1994;31:364–368
- . Birth weight-specific infant mortality due to congenital anomalies, 1960 and 1980. Public Health Rep. 1987;102:171–181
- . Evaluation and use of a synthetic quality control material, included in the European external quality assessment scheme for cystic fibrosis. Hum. Mutat. 2008;29:1063–1070
- The importance of race and ethnic background in biomedical research and clinical practice. N. Engl. J. Med. 2003;348:1170–1175
- . Longitudinal study on early diagnosis and treatment of Phenylketonuria in Poland. Eur. J. Pediatr. 1996;155:S53–S55
- Calonge, N., 2008. The genomic era: a public health perspective. In: Summary of Population-based Carrier Screening for Single Gene Disorders: Lessons Learned and New Opportunities. NHGRI, pp. 1–2.
- Design, development, validation, and use of synthetic nucleic acid controls for diagnostic purposes and application to cystic fibrosis testing. J. Mol. Diagn. 2007;9:315–319
- . The language of life: DNA and the revolution in personalized medicine: carrier screening. Harper. 2010;2:45–50(Chapter 2)
- Coriell Institute for Medical Research, 2010. Coriell Cell Repository. Available from: <http://www.coriell.org/>.
- Cormier, T.A., Tran, K., Forman, J.E., Jackson, A., Lem, P., Hardenbol, P., 2008. SNP Genotyping of Saliva DNA Using Affymetrix GeneChip Targeted Genotyping System. Tech. Rep., Affymetrix. Available from: <http://dnagenotek.com/pdf_files/Affymetrix_SNP_Genotyping.pdf>.
- . The effect of Mendelian disease on human health: a measurement. Am. J. Med. Genet. 1985;21:231–242
- Counsyl, 2010. Map of Counsyl Clinics. Available from: <https://counsyl.com/map>.
- . Chasing a disease to the vanishing point. Science. 2010;328:298–300
- . The science and politics of screening newborns. N. Engl. J. Med. 2002;346:1084–1085
- Multiplex assay for comprehensive genotyping of genes involved in drug metabolism, excretion, and transport. Clin. Chem. 2007;53:1222–1230
- Multiplex assay for comprehensive genotyping of genes involved in drug metabolism, excretion, and transport. Clin. Chem. 2007;53:1222–1230
- Implementation of ironXS: a study of the acceptability and feasibility of genetic screening for hereditary hemochromatosis in high schools. Clin. Genet. 2009;77:241–248
- Use of community genetic screening to prevent HFE-associated hereditary haemochromatosis. Lancet. 2005;366:314–316
- Quantification of rare allelic variants from pooled genomic DNA. Nat. Methods. 2009;6:263–265
- Dungan, J., Elias, S., 2008. Merck Carrier Screening Guidelines. Available from: <http://www.merck.com/mmhe/sec22/ch256/ch256b.html>.
- Joubert syndrome 2 (JBTS2) in Ashkenazi Jews is associated with a TMEM216 mutation. Am. J. Hum. Genet. 2010;86:93–97
- . The Dor Yeshorim story: community-based carrier screening for Tay–Sachs disease. Adv. Genet. 2001;44:297–310
- . Early recognition and intervention for prevention of disability and its complications. East. Mediterr. Health J. 1997;3:154–161
- Elsas, L., 2008. An overview of issues facing carrier screening in large populations. In: Summary of Population-based Carrier Screening for Single Gene Disorders: Lessons Learned and New Opportunities. NHGRI, pp. 2–3.
- . Principles and Practice of Medical Genetics. fifth ed.. New York: Churchill Livingstone; 2007;
- . Pharmacogenetic Tests and Genetic Tests for Heritable Markers. Guidance for Industry and FDA Staff, Food and Drug Administration; 2007;
- . Textbook of Assisted Reproductive Techniques: Laboratory and Clinical Perspectives. second ed.. Informa HealthCare; 2004;
- . Genetic susceptibility screening in schools: attitudes of the school community towards hereditary haemochromatosis. Clin. Genet. 2005;67:166–174
- Tay Sachs disease carrier screening in schools: educational alternatives and cheekbrush sampling. Genet. Med. 2005;7:626–632
- Evaluation of a Tay–Sachs disease screening program. Clin. Genet. 2003;63:386–392
- Genotek, D., 2004. Long-Term Storage of Oragene DNA Samples. Tech. Rep., DNA Genotek.
- . Evaluation of the national health policy of Thalassaemia screening in the Islamic Republic of Iran. East. Mediterr. Health J. 2005;11:308–318
- Participation in research and access to experimental treatments by HIV-infected patients. N. Engl. J. Med. 2002;346:1373–1382
- . Metabolic Diseases: Foundations of Clinical Management, Genetics and Pathology. Westborough, MA: Eaton Publishing Company; 2000;
- . Genetic Diseases among Ashkenazi Jews. Philadelphia: Lippincott Williams and Wilkins; 1979;
- . Cystic fibrosis population carrier screening: here at last—are we ready?. Genet. Med. 2001;3:87–90
- . Laboratory standards and guidelines for population-based cystic fibrosis carrier screening. Genet. Med. 2001;3:149–154
- . The cystic fibrosis mutation ‘arms race’: when less is more. Genet. Med. 2007;9:739–744
- . Genomic medicine: a primer. N. Engl. J. Med. 2002;347:1512–1520
- . Birth of a normal girl after in vitro fertilization and preimplantation diagnostic testing for cystic fibrosis. N. Engl. J. Med. 1992;327:905–909
- Financial burden of national health insurance for treating patients with transfusion-dependent Thalassemia in Taiwan. Bone Marrow Transplant. 2006;37:569–574
- Hoffman, E., 2008. An update on technologies relevant to carrier screening. In: Summary of Population-based Carrier Screening for Single Gene Disorders: Lessons Learned and New Opportunities. NHGRI, p. 7.
- . Frequency of deletional alpha-thalassemia genotypes in a predominantly Asian-American population. Am. J. Clin. Pathol. 1997;107:576–581
- Iwasiow, R., Desbois, A., Birnboim, H., 2004. Long-Term Stability of DNA From Saliva Samples Stored in Oragene DNA. Tech. Rep., DNA Genotek.
- A novel method for creating artificial mutant samples for performance evaluation and quality control in clinical molecular genetics. J. Mol. Diagn. 2005;7:247
- . DNA enrichment by allele-specific hybridization (DEASH): A novel method for haplotyping and for detecting low-frequency base substitutional variants and recombinant DNA molecules. Genome Res. 2003;13:2316–2324
- Preclinical validation of a microarray method for full molecular karyotyping of blastomeres in a 24-H protocol. Hum. Reprod. 2010;25:1066–1075Available from: http://dx.doi.org/10.1093/humrep/dep452
- Jones, S., 2000. Genetics in Medicine: Real Promises, Unreal Expectations. One Scientist’s Advice to Policymakers in the United Kingdom and the United States. Tech. Rep., Milbank Memorial Fund.
- . Reproductive options for individuals at risk for transmission of a genetic disorder. J. Obstet. Gynecol. Neonatal Nurs. 2002;31:193–199
- . Tay–Sachs disease—carrier screening, prenatal diagnosis, and the molecular era. An international perspective, 1970 to 1993. The international TSD data collection network. JAMA. 1993;270:2307–2315
- . Lifetime treatment costs of beta-thalassaemia major. Clin. Lab. Haematol. 1999;21:377–385
- . The cost of health care for children and adults with sickle cell disease. Am. J. Hematol. 2009;84:323–327
- . Population screening in the age of genomic medicine. N. Engl. J. Med. 2003;348:50–58
- . Prevalence and patterns of presentation of genetic disorders in a pediatric emergency department. Mayo Clin. Proc. 2001;76:777–783
- . Preconceptional ancestry-based carrier couple screening for cystic fibrosis and haemoglobinopathies: what determines the intention to participate or not and actual participation?. Eur. J. Hum. Genet. 2009;17:999–1009
- Prevalence and genotypes of alpha- and beta-thalassemia carriers in Hong Kong—implications for population screening. N. Engl. J. Med. 1997;336:1298–1301
- Screening for familial dysautonomia in Israel: evidence for higher carrier rate among Polish Ashkenazi Jews. Genet. Test. 2003;7:139–142
- . Professional Guide to Diseases. eighth ed.. Philadelphia: Lippincott Williams and Wilkins; 2005;
- . The cost of medical care for patients with cystic fibrosis in a health maintenance organization. Pediatrics. 1999;103:e72
- Validation of a multiplex pneumococcal serotyping assay with clinical samples. J. Clin. Microbiol. 2006;44:383–388
- MacNeil, J.S., 2005. Offer Early Genetic Screening, Prompt Disclosure. OB/GYN News.
- . ‘It is not in my world’: an exploration of attitudes and influences associated with cystic fibrosis carrier screening. Eur. J. Hum. Genet. 2008;16:435–444
- . Human Genetics: The Molecular Revolution. first ed.. Sudbury, MA: Jones and Bartlett; 1993;
- . Potential costs and benefits of newborn screening for severe combined immunodeficiency. J. Pediatr. 2005;147:603–608
- A method for rapid, targeted CNV genotyping identifies rare variants associated with neurocognitive disease. Genome Res. 2009;19:1579–1585
- . Educating general practitioners about prenatal testing: approaches and challenges. Prenat. Diagn. 2005;25:592–601
- . Twenty-year outcome analysis of genetic screening programs for Tay–Sachs and beta-thalassemia disease carriers in high schools. Am. J. Hum. Genet. 1996;59:793–798
- . Jewish diseases and origins. Nat. Genet. 1995;9:99–101
- Positive outcome after preimplantation diagnosis of aneuploidy in human embryos. Hum. Reprod. 1999;14:2191–2199
- Highly multiplexed genotyping of coronary artery disease-associated SNPs using MALDI-TOF mass spectrometry. Hum. Mutat. 2002;20:133–138
- National Heart, Lung, and Blood Institute, 1996. Sickle Cell Anemia. Tech. Rep. 96-4057, National Institutes of Health.
- . Next generation disparities in human genomics: concerns and remedies. Trends Genet. 2009;25:489–494
- NHGRI, 2008. Population-based Carrier Screening for Single Gene Disorders. Available from: <http://www.genome.gov/27026048>.
- . Genetic Testing for Cystic Fibrosis. April 14–16, 1997. Arch. Intern. Med. 1999;159:1529–1539
- NIH, 2010. Office of Rare Diseases Research. Available from: <http://rarediseases.info.nih.gov>.
- Educational outcomes of a workplace screening program for genetic susceptibility to hemochromatosis. Clin. Genet. 2006;69:163–170
- . GeneTests: an online genetic information resource for health care providers. J. Med. Libr. Assoc. 2006;94:343–348
- . The future is now: carrier screening for all populations. Genet. Med. 2008;10:33–36
- . Carrier screening for spinal muscular atrophy. Genet. Med. 2008;10:840–842
- Preimplantation genetic diagnosis for familial dysautonomia. Reprod. Biomed. Online. 2003;6:488–493
- . Categorization of humans in biomedical research: genes, race and disease. Genome Biol. 2002;3:2007
- . Quality and quantity of saliva DNA obtained from the self-administrated oragene method—a pilot study on the cohort of Swedish men. Cancer Epidemiol. Biomarkers Prev. 2006;15:1742–1745
- . Iranian national thalassaemia screening programme. BMJ. 2004;329:1134–1137
- . The frequency of genetic disease and congenital malformation among patients in a pediatric hospital. Can. Med. Assoc. J. 1973;108:1111–1115
- . Preimplantation genetic diagnosis. Lancet. 2004;363:1633–1641
- . Early prevention of childhood disability in developing countries. Int. J. Rehabil. Res. 1991;14:1–12
- Human gene mutation database (HGMD): 2003 update. Hum. Mutat. 2003;21:577–581
- Technical validation of a TM biosciences Luminex-based multiplex assay for detecting the American college of medical genetics recommended cystic fibrosis mutation panel. J. Mol. Diagn. 2006;8:371–375
- . CFTR mutation distribution among U.S. hispanic and African American individuals: evaluation in cystic fibrosis patient and carrier screening populations. Genet. Med. 2004;6:392–399
- . O-139: preimplantation genetic diagnosis (PGD) for all cystic fibrosis (CF) carrier couples: strategy and cost analysis. Fertil. Steril. 2006;86:S59
- Successful application of preimplantation genetic diagnosis for Leigh syndrome. Fertil. Steril. 2008;90:2017.e11–2017.e13
- . Changes in the epidemiology of thalassemia in North America: a new minority disease. Pediatrics. 2005;116:e818–e825
- Walker, J., 2006. Healthcare and the Long Tail. Available from: <http://thehealthcareblog.com/the_health_care_blog/2006/07/techqualityphys.html>.
- Analysis of molecular inversion probe performance for allele copy number determination. Genome Biol. 2007;8:R246
- Cost-effectiveness of a school-based Tay–Sachs and cystic fibrosis genetic carrier screening program. Genet. Med. 2005;7:484–494
- Cystic fibrosis population carrier screening: 2004 revision of American college of medical genetics mutation panel. Genet. Med. 2004;6:387–391
- . Is cystic fibrosis carrier screening cost effective?. Community Genet. 2007;10:103–109
- . Challenges in designing a Taqman-based multiplex assay for the simultaneous detection of herpes simplex virus types 1 and 2 and varicella-zoster virus. J. Clin. Virol. 2008;42:326–334
- . Explorative study of costs, effects and savings of screening for female fragile X premutation and full mutation carriers in the general population. Community Genet. 1998;1:36–47
- . A gene map of congenital malformations. J. Med. Genet. 1994;31:507–517
- CFTR gene variant for patients with congenital absence of vas deferens. Am. J. Hum. Genet. 1995;57:958–960
- . High frequencies of human genetic diseases: founder effect with genetic drift or selection?. Am. J. Med. Genet. 1994;49:10–13
- . Population programs for the detection of couples at risk for severe monogenic genetic diseases. Hum. Genet. 2009;126:247–253
- Carrier screening for Gaucher disease: lessons for low-penetrance, treatable diseases. JAMA. 2007;298:1281–1290
Balaji S Srinivasan taught computational genomics and statistics at Stanford before becoming Chief Technology Officer (CTO) of Counsyl. His research interests include machine learning, personalized medicine and the biology and diagnosis of rare genetic variants.
PII: S1472-6483(10)00336-6
doi: 10.1016/j.rbmo.2010.05.012
© 2010 Reproductive Healthcare Ltd. Published by Elsevier Inc All rights reserved.
« Previous
Next »
Reproductive BioMedicine Online
Volume 21, Issue 4
, Pages 537-551
, October 2010
