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PGT for structural chromosomal rearrangements in 300 couples reveals specific risk factors but an interchromosomal effect is unlikely

      Abstract

      Research question

      What factors affect the proportion of chromosomally balanced embryos in structural rearrangement carriers? Is there any evidence for an interchromosomal effect (ICE)?

      Design

      Preimplantation genetic testing outcomes of 300 couples (198 reciprocal, 60 Robertsonian, 31 inversion and 11 complex structural rearrangement carriers) were assessed retrospectively. Blastocysts were analysed either by array-comparative genomic hybridization or next-generation sequencing techniques. ICE was investigated using a matched control group and sophisticated statistical measurement of effect size (φ).

      Results

      300 couples underwent 443 cycles; 1835 embryos were analysed and 23.8% were diagnosed as both normal/balanced and euploid. The overall cumulative clinical pregnancy and live birth rates were 69.5% and 55.8%, respectively. Complex translocations and female age (≥35) were found to be risk factors associated with lower chance of having a transferable embryo (P < 0.001). Based on analysis of 5237 embryos, the cumulative de-novo aneuploidy rate was lower in carriers compared to controls (45.6% versus 53.4%, P < 0.001) but this was a ‘negligible’ association (φ < 0.1). A further assessment of 117,033 chromosomal pairs revealed a higher individual chromosome error rate in embryos of carriers compared to controls (5.3% versus 4.9%), which was also a ‘negligible’ association (φ < 0.1), despite a P-value of 0.007.

      Conclusions

      These findings suggest that rearrangement type, female age and sex of the carrier have significant impacts on the proportion of transferable embryos. Careful examination of structural rearrangement carriers and controls indicated little or no evidence for an ICE. This study helps to provide a statistical model for investigating ICE and an improved personalized reproductive genetics assessment for structural rearrangement carriers.

      Keywords

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        Human Reproduction (Oxford, England). 2019; 34: 380-387https://doi.org/10.1093/humrep/dey367
        • Zhang L.
        • Jiang W.
        • Zhu Y.
        • Chen H.
        • Yan J.
        • Chen Z.J.
        Effects of a carrier's sex and age on the segregation patterns of the trivalent of Robertsonian translocations.
        Journal of Assisted Reproduction and Genetics. 2019; 36: 1963-1969https://doi.org/10.1007/s10815-019-01534-6
        • Zhang S.
        • Lei C.
        • Wu J.
        • Sun H.
        • Zhou J.
        • Zhu S.
        • Wu J.
        • Fu J.
        • Sun Y.
        • Lu D.
        • Sun X.
        • Zhang Y.
        Analysis of segregation patterns of quadrivalent structures and the effect on genome stability during meiosis in reciprocal translocation carriers.
        Human Reproduction (Oxford, England). 2018; 33: 757-767https://doi.org/10.1093/humrep/dey036

      Biography

      Çağrı Oğur is a senior clinical scientist working in the field of reproductive genetics since 2003. She has academic degrees in molecular biology, biomedical science and bioengineering. She has written more than 25 papers including articles, reviews and book chapters. Her research interests are the origin of chromosomal abnormalities in preimplantation embryos, non-invasive preimplantation genetic testing and the genetic basis of premature ovarian failure. She is currently working as a laboratory manager in Istanbul, Turkey.
      Key message
      Segregations were affected by rearrangement type and the carrier's sex, whereas female age was the dominant impact factor associated with de-novo aneuploidy. Carriers of balanced chromosome rearrangements did not exhibit higher aneuploidy rates for chromosomes not involved in the rearrangement, and the results revealed no evidence for an interchromosomal effect.